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SCI誕生五十周年 百大高引論文榜單揭曉

時間:2014-11-1閱讀:408
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Nature:SCI誕生五十周年 百大高引論文榜單揭曉

為了紀念科學(xué)引文索引(SCI)誕生五十周年,Nature委托湯森路透列出了數(shù)據(jù)庫中的百大高引論文。榮登的那篇文章你一定猜不到。

Nature:SCI誕生五十周年 百大高引論文榜單揭曉

據(jù)介紹,這份名單的入圍資格是引用次數(shù)超過12,119。令人意外的是,許多特別的論文并未入榜,比如DNA雙螺旋結(jié)構(gòu)的確定。而1951年發(fā)表的一種蛋白定量方法,狂攬三十多萬次引用,成為了zui大的贏家。該文章的作者,美國生化學(xué)家Oliver Lowry也對此感到困惑。

 

RankTitleTimes cited
1Protein measurement with the folin phenol reagent.305148
2Cleavage of structural proteins during the assembly of the head of bacteriophage T4.213005
3A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.155530
4DNA sequencing with chain-terminating inhibitors.65335
5Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.60397
6Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.53349
7Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.46702
8Density-functional thermochemistry. III. The role of exact exchange.46145
9A simple method for the isolation and purification of total lipides from animal tissues.45131
10Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.40289
11Nonparametric estimation from incomplete observations.38600
12Basic local alignment search tool.38380
13A short history of SHELX.37978
14Gapped BLAST and PSI-BLAST: A new generation of protein database search programs.36410
15A revised medium for rapid growth and bio assays with tobacco tissue cultures.36132
16Generalized gradient approximation made simple.35405
17"Mini-mental state": A practical method for grading cognitive state of patients for clinician.34532
18A rapid method of total lipid extraction and purification.32131
19Detection of specific sequences among DNA fragments separated by gel-electrophoresis.31904
20The neighbor-joining method: A new method for reconstructing phylogenetic trees.30176
21Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method.28870
22Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides.28658
23Processing of X-ray diffraction data collected in oscillation mode.28647
24Regression models and life-tables.28439
25Density-functional exchange-energy approximation with correct asymptotic-behavior.26475
26Colorimetric method for determination of sugars and related substances.25735
27Use of lead citrate at high pH as an electron-opaque stain in electron microscopy.24449
28The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools.24098
29Statistical methods for assessing agreement between two methods of clinical measurement.23826
30Reliability of molecular weight determinations by dodecyl sulfate-polyacrylamide gel electrophoresis.23642
31Isolation of biologically-active ribonucleic-acid from sources enriched in ribonuclease.23435
32The attractions of proteins for small molecules and ions.23421
33The moderator–mediator variable distinction in social psychological-research — conceptual, strategic, and statistical considerations.23356
34Self-consistent equations including exchange and correlation effects.23059
35Rapid colorimetric assay for cellular growth and survival — application to proliferation and cyto-toxicity assays.23011
36Helical microtubules of graphitic carbon.22899
37The colorimetric determination of phosphorus.22690
38Disc electrophoresis  — II. Method and application to human serum proteins.22074
39Inhomogeneous electron gas.21931
40A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.21446
41Confidence limits on phylogenies: an approach using the bootstrap21373
42A new generation of Ca2+ indicators with greatly improved fluorescence properties19561
43Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set.18856
44High-resolution 2-dimensional electrophoresis of proteins.18489
45MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.18286
46Fuzzy sets.18203
47Phase annealing in SHELX-90: direct methods for larger structures.17728
48Clinical diagnosis of Alzheimer’s disease: Report of the NINCDS-ADRDA Work Group under the auspices of Department of Health and Human Services Task Force on Alzheimer’s Disease.17220
49Special points for Brillouin-zone integrations.17087
50Study of the conditions and mechanism of the diphenylamine reaction for the colorimetric estimation of deoxyribonucleic acid.17067
51The CES-D scale: a self-report depression scale for research in the general population.17055
52Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.17025
53A rating scale for depression.16734
54An inventory for measuring depression.16264
55A simple method for displaying the hydropathic character of a protein.16059
56Determination of serum proteins by means of the biuret reaction.16009
57Maximum likelihood from incomplete data via EM algorithm.15993
58Equation of state calculations by fast computing machines.15902
59Controlling the false discovery rate: a practical and powerful approach to multiple testing.15898
60Measurement of protein using bicinchoninic acid.15802
61The assessment and analysis of handedness: the Edinburgh inventory.15517
62Estimation of concentration of low-density lipoprotein cholesterol in plasma, without use of preparative ultracentrifuge.15469
63Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.15160
64Multiple range and multiple F tests.15047
65Electric field effect in atomically thin carbon films.15022
66Tissue sulfhydryl groups.15019
67Isolation of mononuclear cells and granulocytes from human blood.14934
68The measurement of observer agreement for categorical data.14903
69Crystallography & NMR system: a new software suite for macromolecular structure determination.14898
70Gaussian-basis sets for use in correlated molecular calculations. 1. The atoms boron through neon and hydrogen.14617
71PROCHECK: a program to check the stereochemical quality of protein structures.14462
72The MOS 36-item short-form health survey (SF-36): I. Conceptual framework and item selection.14332
73A new look at statistical-model identification.14275
74Improved M13 phage cloning vectors and host strains — nucleotide-sequences of the M13mp18 and pUC19 vectors14232
75A comprehensive set of sequence-analysis programs for the vax.14226
76MODELTEST: Testing the model of DNA.14099
77From ultrasoft pseudopotentials to the projector augmented-wave method.14049
78Use of avidin-biotin-peroxidase complex (ABC) in immunoperoxidase techniques: a comparison between ABC and unlabeled antibody (PAP) procedures.13881
79Comparison of simple potential functions for simulating liquid water.13774
80The development and use of quantum-mechanical molecular-models. 76. AM1: a new general-purpose quantum-mechanical molecular-model13718
81Phosphorus assay in column chromatography.13523
82MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures.13496
83Van der Waals volumes and radii.13417
84A new and rapid colorimetric determination of acetylcholinesterase activity.13332
85Projector augmented-wave method.13330
86Optimization by simulated annealing.13293
87Nitric oxide: physiology, pathophysiology, and pharmacology.13267
88An algorithm for least-squares estimation of nonlinear parameters.13258
89Efficiency of ab initio total energy calculations for metals and semiconductors using a plane-wave basis set.13084
90A low-cost, high-efficiency solar-cell based on dye-sensitized colloidal TiO2 films.12873
91A low-viscosity epoxy resin embedding medium for electron microscopy.12807
92The Protein Data Bank.12754
93Accurate and simple analytic representation of the electron-gas correlation-energy12748
94Rapid alkaline extraction procedure for screening recombinant plasmid DNA.12721
95Improved methods for building protein models in electron-density maps and the location of errors in these models.12649
96Accurate spin-dependent electron liquid correlation energies for local spin-density calculations — a critical analysis.12583
97Continuous cultures of fused cells secreting antibody of predefined specificity.12391
98Homeostasis model assessment: insulin resistance and beta-cell function from fasting plasma glucose and insulin concentrations in man.12257
99Adsorption of gases in multimolecular layers.12252
100MrBayes 3: Bayesian phylogenetic inference under mixed models12209
101Atherosclerosis — an inflammatory disease.12119

 

那么榜上還有哪些與生物學(xué)有關(guān)的關(guān)鍵方法呢?

生物學(xué)技術(shù)

引文主要被蛋白質(zhì)生化論文所占據(jù)。1951年發(fā)表的Lowry蛋白定量法遙遙,而Bradford蛋白定量法位列第三。排在它們之間的是用于蛋白分析的Laemmli緩沖液。這些技術(shù)在細胞和分子生物學(xué)文章中被大量引用,它們?nèi)允沁@些領(lǐng)域zui基本的工具之一。

上榜的生物學(xué)技術(shù)中有兩個獲得了諾貝爾獎。Frederick Sanger的DNA測序方法位列第四,該方法也為他贏得了1980年的諾貝爾化學(xué)獎。Kary Mullis因PCR法獲得了1993年的諾貝爾化學(xué)獎,這一方法在引文中位列63。測序和PCR都是遺傳學(xué)研究的革命性技術(shù),如今仍然有著旺盛的生命力。

除此之外,上世紀八十年代的一種RNA純化技術(shù)位列第五。該技術(shù)實現(xiàn)了低成本的快速RNA提取,受到了廣泛的歡迎。在非編碼短RNA的研究熱潮中,這一技術(shù)仍然起著重要的作用。

生物信息學(xué)

基因測序的迅猛發(fā)展,大大提高了序列分析論文的排名,BLAST就是一個很好的例子。對于研究基因和蛋白功能的研究者來說,BLAST近二十年來算得上是*。我們只需要打開一個網(wǎng)頁,輸入DNA、RNA或蛋白序列,就能在幾秒鐘內(nèi)獲得各種生物中的相關(guān)序列。BLAST的兩個版本居然都上了榜,分別在12位和14位。

能夠一次比對多個序列的Clustal也不甘示弱,ClustalW和ClustalX的排名分別是第10和第28。在Clustal軟件的幫助下,人們能研究源自不同生物的序列有怎樣的進化關(guān)系,看起來不想關(guān)的序列存在怎樣的匹配,預(yù)測DNA或蛋白特定位點發(fā)生改變對其功能有何影響。

系統(tǒng)發(fā)生

系統(tǒng)發(fā)生學(xué)主要是研究物種之間的進化關(guān)系,這類方法也隨著基因組測序的發(fā)展而水漲船高。

榜的第二十位是neighbor-joining法。這種方法由根井正利(Masatoshi Nei)等人提出,可以根據(jù)大量物種之間的進化距離,快速有效的構(gòu)建進化樹。

排在第41位的文章,將統(tǒng)計學(xué)工具用到了系統(tǒng)發(fā)生研究中。這種稱為bootstrap的工具,能夠推斷進化樹不同部分的性。

榜上的其他生物學(xué)相關(guān)方法,還包括一些用在生物醫(yī)學(xué)領(lǐng)域的統(tǒng)計學(xué)方法,以及晶體結(jié)構(gòu)分析用到的工具。(除了湯森路透的榜以外,Google學(xué)術(shù)搜索也排出了自己的名單,感興趣的同志們請點這里 )

“如果你想要的是被引用,”耶魯大學(xué)的化學(xué)家Peter Moore評論道。“那么開發(fā)一種人們需要的方法比探尋宇宙的秘密更容易達到目的。”

原文檢索:

Richard Van Noorden,Brendan Maher & Regina Nuzzo. The 00 papers. Nature, 30 October 2014; doi:10.1038/514550a

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